BoNesis is a Python-based environment for the synthesis and control of ensembles of Boolean networks from structural and dynamical properties, developed by Loïc Paulevé (LaBRI).
scBoolSeq is a Python package for scRNA-Seq data binarisation and synthetic generation from Boolean dynamics, developed by Gustavo Magaña López (LaBRI). Check the bioRxiv preprint!
Harissa is a Python package for stochastic simulation and statistical inference of gene regulatory networks from single-cell data, developped by Ulysse Herbach. Check out the presentation paper (also available on arXiv).
citcdf is an R package to perform conditional independence testing using empirical conditional cumulative distribution function estimations, with a focus on scRNA-seq differential testing.
BoNesis is a Python-based environment for the synthesis and control of ensembles of Boolean networks from structural and dynamical properties, developed by Loïc Paulevé (LaBRI).
citcdf is an R package to perform conditional independence testing using empirical conditional cumulative distribution function estimations, with a focus on scRNA-seq differential testing.