Publications

Open access articles or preprints () are linked below. Supplementary materials on GitHub () and OSF () for each publication are linked below the citation.

Z. Oulhaj, M. Carrière, B. Michel. Differentiable Mapper for Topological Optimization of Data Representation, Preprint, 2024

N. Varoquaux, W. S. Noble, J.-P. Vert. Inference of 3D genome architecture by modeling overdispersion of Hi-C data, Bioinformatics, January 2023

S. S. Abby, R. Denise, E. P. Rocha. Identification of protein secretion systems in bacterial genomes using MacSyFinder version 2, January 2023

L. Etourneau, N. Varoquaux, T. Burger. Unveiling the Links Between Peptide Identification and Differential Analysis FDR Controls by Means of a Practical Introduction to Knockoff Filters, 2023